======DILS Seminar======
=====Summer Semester 24=====

**Tuesdays, 14:15, [[https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=449961025|ekvv]]**

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**Hybrid: U10-116/146 and online via Zoom.**

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This doctoral research seminar of the DILS graduate school is dedicated to PhD students of the Bielefeld Institute for Bioinformatics Infrastructure (BIBI) and friends. Guests are always welcome.

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The topics presented are determined by the research interests of the graduate school. The main aim of this seminar is to keep the participants informed on the current developments and to critically discuss recent developments.

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This semester, we want to become further acquainted with the research that is pursued in the individual groups. Of course, we are well informed about the projects of our DILS colleagues anyway. So, the focus in the seminar will be on //other// projects of the groups. Everyone selects a recent publication of their group that
  * covers a topic representative for the groups research portfolio, and
  * is not directly related to their own research.
In teams of two (or three) DILS members from different groups, participant //A// gets assigned participant //B//'s paper (and vice versa). //A// prepares the paper and presents it in a seminar talk. In the preparation phase and also in the discussion after the talk, //B// assists with further context, background information etc.

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^ Date ^ Publication ^ Name ^
| 09.04. | Organization of the seminar ||
| 16.04. |  |  |
| 23.04. |  |  |
| 30.04. | R. Heyer, et al., **Challenges and perspectives of metaproteomic data analysis**, [[https://doi.org/10.1016/j.jbiotec.2017.06.120|J Biotechnol., 2017]] | Tom |
| 07.05. | D. Walke, ..., R. Heyer, **The importance of graph databases and graph learning for clinical applications**, [[https://doi.org/10.1093/database/baad045|Database, 2024]] | Benedikt |
| 14.05. | Ö. Maraci, ..., S. Jünemann, et al., **Timing matters: age-dependent impacts of the social environment and host selection on the avian gut microbiota**, [[https://doi.org/10.1186/s40168-022-01401-0|Microbiome, 2022]]  | Max |
| 21.05. | M. Braga, ..., J. Stoye, **Investigating the complexity of the double distance problems**, [[https://doi.org/10.1186/s13015-023-00246-y|Algorithms for Molecular Biology, 2024]] | Luna |
| 28.05. | administrative issues | all |
| 04.06. | F. Meyer, ...,  A. Sczyrba, A. McHardy, **Critical Assessment of Metagenome Interpretation: the second round of challenges**, [[https://doi.org/10.1038/s41592-022-01431-4|Nature Methods, 2022]] | Emanuel |
| 11.06. | L. Cunha, ..., J. Stoye, **Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings**, [[https://doi.org/10.4230/LIPIcs.CPM.2017.19|CPM, 2017]] | Muhammad |
| 18.06. | T. Bossche, ..., R. Heyer, et al., **Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows**, [[https://doi.org/10.1038/s41467-021-27542-8| Nature Communications]] | Luca |
| | Cake & M. Sharan, K. Förstner, et al., **APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins**, [[https://doi.org/10.1093/nar/gkx137|NAR, 2017]]  | Leonard |
| 25.06. | M. Martin, M. Patterson, ..., A. Schönhuth, T. Marschall, **WhatsHap: fast and accurate read-based phasing**, [[https://doi.org/10.1101/085050|bioRxiv, 2016]] | Andreas |
| 02.07. |T. Melnychuk, ..., K. Förstner, et al., **Development of Similarity Measures From Graph-Structured Bibliographic Metadata: An Application to Identify Scientific Convergence**, [[https://doi.org/10.1109/TEM.2023.3308008|IEEE Transactions on Engineering Management, 2023]]  | Manuel |
| 09.07. | D. Arend, ..., M. Lange, et al., **From data to knowledge - big data needs stewardship, a plant phenomics perspective**, [[https://onlinelibrary.wiley.com/doi/10.1111/tpj.15804|the Plant Journal, 2022]]| Vanessa |
| 16.07. | B. Kirsch-Gerweck, ..., Jens Stoye, et al., **HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets**, [[https://doi.org/10.1093/molbev/msad027|Molecular Biology and Evolution, 2023]] | Daniel |

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The randomly arranged teams are:
  * Leonard, Muhammad
  * Manuel, Vanessa
  * Emanuel, Benedikt
  * Luca, Daniel
  * Luna, Andreas
  * Tom, Max